Our team
Numerous people work so that iPOP-UP can improve your bioinformatic experience within Université Paris Cité
Executive committee
Founder members
- Franck Letourneur (molecular biologist, Université Paris Cité), is a research engineer, head of the GENOM’IC platform at the Institute Cochin (INSERM U1016). This Ibisa labelled facility is specialized in transcriptomic analyses based on Next Generation Sequencing, both producing and analyzing data.
- Valérie Mezger
- Pierre Tufféry is Directeur de Recherche at INSERM, and head of the Computational Modeling of Protein-Ligand Interactions (CMPLI) in the Biologie Fonctionnelle et Adaptative (BFA) research unit at Paris Diderot. His research interests include the modeling of protein-peptide interactions and peptide design. He is also the founder of the RPBS platform, he lead from 2004 to 2021.
- Michel Werner started his research in the CEA of Sacaly in 1989 where he arrived as a post-doc. He was then recruited as a permanent researcher in 1991 and had several different post, inclusing team leader, lab leader, culminating with becomming head of institute. Since 2018 he his director of the Institut Jacques Monod in Paris. His research interest included trancription mecnism in eucaryotes, especially in Saccharomyces cerevisiae. He is member of numerous scientific boards and foundations aiming to finance research.
Members
- Karine Audouze (Systems biology, Université Paris Cité), is professor in bioinformatics and systems biology at the University of Paris, and leader of the SysTox group. Her research interests include computational approaches to evaluate environmental factor exposure effects to human health.
- Marc Baaden (Chemist, Université Paris Cité), is Directeur de Recherche at CNRS and head of the Laboratoire de Biochimie Théorique (UPR9080). His research interests include the study of membrane proteins using high performance computing, the development of new bioinformatics methods and approaches, which he offers to the scientific community. His research combines simulations of proteins and bioinformatics with high-performance computing, virtual reality, visualization, and dissemination activities.
- Florent Barbault (chemist, Université Paris Cité) is a lecturer at the ITODYS laboratory. He’s supervising the “theoretical chemistry and modeling” team and coordinates its different themes. His researches are focus on the modeling of biomolecules, biomaterials and biosensors at the atomic scale by combining complementary approaches.
- Pierre Gressens is Directeur de Recherche (DRCE) at INSERM, and head of the research unit ”Neurodevelopmental and Neurovascular Disorders” (UMR1141, Inserm – Université Paris Cité). His research interests include neurodevelopmental disorders, understanding their pathophysiology, and designing novel neuroprotective strategies, using different tools including advanced integrated bioinformatics. He is also a key founder of the Child Brain Institute at Robert Debré Hospital.
- Pascale Lesage is Director of Research at the CNRS and co-leader of the team “Genome biology: from mobile DNA to chromosome dynamics” at the Institut de Recherche Saint Louis (UPC, Hôpital Saint Louis). Her research focuses on the study of transposable elements, the mechanisms that control their mobility and their impact on the genome in the eukaryotic model Saccharomyces cerevisiae. She is also co-director of the GDR 3546 “Les Eléments Génétiques Mobiles : du mécanisme aux populations, une approche intégrative”, and is a member of the board of the Association l’Arbre des connaissances.
- Nicolas Leuliot
- Bruno Lucas
- Fabiola Terzi
Advisers
- Claire Mangeney (Chemist, Université Paris Cité), is professor of chemistry and leader of the Nano Bio-Spectroscopy group in the Laboratory of Chemistry and Biochemistry (LCPBT). Her research is at the interface of surface chemistry, nanotechnology and biology, with a particular focus on the design of hybrid nanomaterials for biological-related applications and the development of spectroscopic tools for bioanalysis. She is also vice-dean of scientific platforms and equipments at the Faculty of Science
- Jacques van Helden
- Alain Zider
Technical Committee
- Cristophe Cerin, (Computer Science, University Sorbonne Paris Nord), is professor of computer science at University Sorbonne Paris Nord, and scientific head of the MAGI computing platform. His research interests include parallel computing, cloud computing, high performance computing, and big data.
- Yves Clément, (Institut Jacques Monod, Université Paris Cité) is an assistant professor in the Stem Cells, Development and Evolution team where he works on comparative genomics, evolutionary biology and functional genomics aspects to determine the origins and evolution of regeneration in animals. He teaches bio-statistics and large-scale omics biological data analysis.
- Magali Hennion, (Université Paris Cité) is a research engineer from CNRS, head of the BiBs platform, which provide support in bioinformatic and biostatistics to the member of the Epigénétique de Destin Cellulaire Unit. She is specialised in the analysis of NGS data, mostly in transcriptomic and epigenomic. She devellops tools to make analysis reproducible and accessible to as many people as possible.
- Jean-Phillipe Jaïs
- Olivier Kisrh, (Université Paris Cité) is a lecturer in the Life Sciences Department. He teaches biostatistics, molecular biology and bioinformatics for omics data analysis. He leads the BiBs platform with Magali Hennion. A biologist by training, he is interested in epigenomic data analysis and works on DNA methylation dynamics with Dr Defossez’ team.
- Pierre Poulain
- Julien Rey
- Benjamin Saintpierre, bioinformatician at the Institut Cochin, on the GENOM’IC plateform. I am in charge of the bioinformatics analysis, for the RNA-Seq and scRNA-Seq projects of the plateform, from alignement to statistical results and clustering. I also provide a bioinformatical support for the understanding of statistical published results, uploading data on public database and supervising interns from Master of bioinformatics. I am currently at the head of the creation of a bioinformatic HUB for the Institut Cochin.
- Guillaume Seith
- Niclas Setterblad
- Alix Silvert (Université Paris Cité), is the scientific manager of iPOP-UP. They manage not only the community aspect of iPOP-UP by animating several events, but they also bring direct bioinformatic helps in several teams. Specialist in transcriptomic, they mostly assist in the treatment of single cell dataset
- Sjoerd de Vries
You might find interesting
BiBs EDC
The Epigenetics and Cell Fate lab BiBs facility provides a broad range of services related to bioinformatics. We support staff in their bioinformatics and biostatistics analyses, promoting their skills development and developing their autonomy.
SysTox
The main interest of the SysTox group is to develop innovative computational methods and tools, and applied them in the area of toxicology. SysTox works mainly with network science, systems biology and artificial intelligence. Research Interest Humans are constantly...
Chromatin Dynamics in Mammalian Development
Research Interest We strive to gain a clear understanding of the profound epigenetic consequences of DNA methylation in a window of development, which occurs in the first week of mouse embryogenesis, and the second of human, but the repercussions of which can ripple...
Cell fate, plasticity and reprogramming
Research Interest In the Cell fate, plasticity and reprogramming lab (Team leader: Antoine Zalc), we study how cranial neural crest cells – a stem cell-like population – reverse cell differentiation and return into a higher pluripotency state, resulting in the...